PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00770.120
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 414aa    MW: 44941.7 Da    PI: 4.9979
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00770.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.9e-30179237259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+++++ Y+g+H+h+
  Jcr4S00770.120 179 NDVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNMFVVSYSGDHTHP 237
                     8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-30166239IPR003657WRKY domain
SuperFamilySSF1182903.66E-26173239IPR003657WRKY domain
PROSITE profilePS5081132.925173239IPR003657WRKY domain
SMARTSM007748.4E-36178238IPR003657WRKY domain
PfamPF031069.5E-26179237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRLIFKTAVT FKTLLDCLTF NHVDAPFSFP AIALAQQPTN NGWLELQDSY MPFLPTTIDQ  60
PNILSSSISD FCGFSGQNQP QLAQQEQLQL QHQQQLPLPP PPSPPPSLPP PPQPLNVPLS  120
LRFNNSPQQR KLHQQGSQRP ETTNSVHPLR NTPSPARSRK KKSNMKRQVM QVTADNLCND  180
VWAWRKYGQK PIKGSPYPRN YYRCSSSKGC AARKQVERSN TDPNMFVVSY SGDHTHPRPT  240
HRNSLAGSTR NKFPTIQKPD IKETEEPSGE KAPCSSPLSA TSLSPTTPLS VSMEHELAAN  300
EIIGTDAGNM DGADLLEGHG MESDGDGEGD GDGDGDGDGY SYDDEDDEDI LIPNMMLNED  360
IIKGLQELGT FGDGAFGFGS TNSGGLGRSP DFGDNFSSWA VGSSAAVAGA RGGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-201802401880Disease resistance protein RRS1
5w3x_D2e-201802401880Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853000.0KC485300.1 Jatropha curcas WRKY transcription factor 48 (WRKY48) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090724.10.0probable WRKY transcription factor 27
TrEMBLS5CH650.0S5CH65_JATCU; WRKY transcription factor 48
STRINGcassava4.1_008781m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-51WRKY DNA-binding protein 27