PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00717.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 454aa    MW: 50447.9 Da    PI: 5.6237
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00717.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17143192155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Jcr4S00717.90 143 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 192
                    78*******************......55************************997 PP
2AP221.65.3e-072382702555
            AP2  25 ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +g   +k+++lg f+++ eAa+a+++a+ k +g
  Jcr4S00717.90 238 RGvtLHKYIYLGLFDSEIEAARAYDKAAIKCNG 270
                    565556**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-16143202IPR016177DNA-binding domain
PfamPF008475.1E-9143192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17144200IPR001471AP2/ERF domain
CDDcd000181.59E-11144202No hitNo description
PROSITE profilePS5103217.899144200IPR001471AP2/ERF domain
SMARTSM003808.4E-33144206IPR001471AP2/ERF domain
PROSITE profilePS5103211.469189278IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-9235279IPR016177DNA-binding domain
CDDcd000187.45E-16235280No hitNo description
SMARTSM003801.2E-13236284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-10244278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLDLNLSVVS ANSTSGSLEM AGETGGATNK KKNILEVSSN QMESSGSFNS SSIVNAGDED  60
SCSNGEPCGY TFSILTNDQA KVFDDDDDDC ARGRTIQFFP VDGPSSDSMK RQWLDLGGRD  120
MVAQVQQRPP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA  180
RAYDRAAIKF RGVDADINFS VSDYEEDIMQ MSNFTKEEFV HILRRQSTGF SRGSSKYRGV  240
TLHKYIYLGL FDSEIEAARA YDKAAIKCNG REAVTNFEPS TYEGQIISEA NNGDGNQNLD  300
LNLGIAPPDI SESQKINREM DTFHFQSSWD GRYELPYDPP MAPEPPALWG GLDTNFFPIC  360
KVFAHALEVI VERAIDKRME VDSLPNWTWQ SQGPYGGANP LPLYSTAASS GFSPSTITVP  420
SAASGQFHFP NSAILHRHFS PFRHQPQQHL PFLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538231.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ8H4433e-89AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A067K9U10.0A0A067K9U1_JATCU; Uncharacterized protein
STRINGXP_002525190.11e-178(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-75related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]