PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00701.20 | ||||||||
Common Name | JCGZ_12346, LOC105639663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | G2-like | ||||||||
Protein Properties | Length: 350aa MW: 39847.1 Da PI: 7.1423 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.2 | 3.9e-33 | 223 | 278 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Jcr4S00701.20 223 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 278 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.37E-19 | 221 | 281 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.421 | 222 | 280 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-30 | 222 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-27 | 223 | 278 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-8 | 225 | 276 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MELSLDLSLV YVPKTISEYL KEVSKVKDAS LRLSKLDDFV KRLEDEMRKI DAFKRELPLC 60 MLLLNDAIVK LKEEAMQCKR SKDPVPVKGN SGKDDISDKK NWMSSVQLWN SNDIDFNSKK 120 QDSISEIRQK SEEEDDRSTC ENPIQLCNSR SKRGAFVPFK AISGFEGTER KEEKEVMSQV 180 TGLSLMTPVP ELGTCNLMSK SNNVTNQMKI QSKPHQQQQP YKKQRRCWSP ELHRRFVDAL 240 QQLGGSQVAT PKQIRELMQV DGLTNDEVKS HLQKYRLHIR KLPASSAAQA NALWLAKCED 300 SSKPNISESA KDISSTGDDS MDVVDDNDDN KSESHSWNGR LHHKEGEFDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-14 | 223 | 276 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 223 | 276 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 223 | 276 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 223 | 276 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 223 | 276 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079175.1 | 0.0 | myb family transcription factor EFM | ||||
TrEMBL | A0A067KHZ0 | 0.0 | A0A067KHZ0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_010485m | 1e-170 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 5e-73 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105639663 |
Publications ? help Back to Top | |||
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