PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00617.160 | ||||||||
Common Name | JCGZ_21451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18350.9 Da PI: 7.1637 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 2 | 38 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++L +l+P++ ++ + +s + Le+A +YIk+Lq Jcr4S00617.160 2 KALYSKLNSLVPHQ--TSREPMSLPDQLEEAARYIKKLQ 38 56799********8..36666*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-6 | 1 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-6 | 1 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKALYSKLNS LVPHQTSREP MSLPDQLEEA ARYIKKLQTN LEKMKERKNN LTGNEMENKA 60 SLMSSSRTTM QYLRSPQIEI HEMGSALEIV LITGLDSQFM FNETIRVLHE EGAEIVNANF 120 SAINDTVFHT IHSKISDSTH SCGAARISER LKKLVQDANN PF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091614.1 | 1e-118 | uncharacterized protein LOC105649551 | ||||
Swissprot | F4JIJ7 | 6e-43 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A067JLU2 | 1e-116 | A0A067JLU2_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0011s05320.1 | 1e-77 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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