PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00605.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 431aa    MW: 48758 Da    PI: 7.6418
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00605.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-083454526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    C ++++ G+C+yG+rC++ H+
  Jcr4S00605.30 34 VCTYYQK-GICSYGSRCRYEHV 54
                   5******.***********997 PP
2zf-CCCH21.54.1e-07142164326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++lC+ fa+ G C++Gd+C+ +Hg
  Jcr4S00605.30 142 QSLCS-FAAAGSCPRGDKCPHIHG 164
                    57999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-4127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1032956IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53253IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076140165IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4142164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4144164IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.74E-13196272No hitNo description
Gene3DG3DSA:3.30.40.108.6E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.79E-4207267No hitNo description
PfamPF000975.6E-7208265IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.2E-7208265IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.238208266IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.053295323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422295324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEH CEFSHDWKDP PNNVCTYYQK GICSYGSRCR YEHVKPSRSD  60
SASSSSAIPQ RSFLSTSSSP ARPVRNGSSR GTSVSGASGE LSASSLPYFP PSKPAWNLET  120
ATNDVVENDC IIEPRNVKPE EQSLCSFAAA GSCPRGDKCP HIHGDICPTC GKQCLHPFRP  180
QEREEHLKTC EKKQKHLEAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSSSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS SKEEKQEIID SYKSKLRSID  300
CKHFDFGNGN CPFGTSCFYK HTVKPGSYTW KYHRPPPRRP RPRRSSVVDN MNAFFDVFEN  360
LIEEDEFDIF DAEDYFDEDY MAFLLMQLNF HAYRDGRLEE VALRHLGAED GNTVIAKNIR  420
LSDFLSGLQM S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065543.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N41e-156C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A067L4R40.0A0A067L4R4_JATCU; Uncharacterized protein
STRINGcassava4.1_008853m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-143C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]