PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00593.30 | ||||||||
Common Name | JCGZ_26434, LOC105648782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21685.9 Da PI: 10.0598 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.7 | 7.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng+lKKA+ELS+LCdaev++++fs++gk y ++s Jcr4S00593.30 9 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVCLLVFSPSGKAYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 62.2 | 2e-21 | 79 | 164 | 7 | 92 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 +++ ++ e++++e++ Lk+ ++ ++++Rh+ Ged+++L ++eL+qLe+qL +++++iRsk ++ l e+ +lqk+ k ++ + Jcr4S00593.30 79 NDQRSRSLEYWRNEIEELKRTMDATETKIRHFCGEDISKLGMRELKQLERQLRTAIERIRSKMHKALQEENARLQKRVKIHELNDP 164 44677889*********************************************************************998776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.057 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.08E-39 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 3.0E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.4E-17 | 83 | 159 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.953 | 86 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048455 | Biological Process | stamen formation | ||||
GO:0048459 | Biological Process | floral whorl structural organization | ||||
GO:0048509 | Biological Process | regulation of meristem development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0080112 | Biological Process | seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSILCD AEVCLLVFSP SGKAYQFASH 60 DMDRTIARYR SEVGLLGSND QRSRSLEYWR NEIEELKRTM DATETKIRHF CGEDISKLGM 120 RELKQLERQL RTAIERIRSK MHKALQEENA RLQKRVKIHE LNDPNVRYSI LEADALCRVL 180 HDGAVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 7e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 7e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 7e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 7e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090674.1 | 1e-132 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
TrEMBL | A0A1B0Z6H1 | 1e-130 | A0A1B0Z6H1_JATCU; CAULIFLOWER A-like transcription factor isoform X1 | ||||
STRING | Migut.D01274.1.p | 2e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.2 | 1e-46 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105648782 |
Publications ? help Back to Top | |||
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