PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00591.90

Common Name

JCGZ_18025, WRKY10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 740aa MW: 81197.8 Da PI: 6.0301

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00591.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	9.1e-33	274	331	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkk+ers+ d++++ei+Y+g Hnh+k Jcr4S00591.90 274 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKIERSH-DGQITEIIYKGAHNHPK 331 7**************************************.*************85 PP
2	WRKY	102.1	3.2e-32	485	543	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v++tYeg+Hnhe Jcr4S00591.90 485 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHNLKYVITTYEGKHNHE 543 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-29	263	332	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-25	272	332	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	273	331	IPR003657	WRKY domain
Pfam	PF03106	4.6E-25	274	330	IPR003657	WRKY domain
PROSITE profile	PS50811	23.697	274	332	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.3E-35	470	545	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-28	478	545	IPR003657	WRKY domain
PROSITE profile	PS50811	37.528	480	545	IPR003657	WRKY domain
SMART	SM00774	9.9E-37	485	544	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	486	543	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MDPNPPPQQP STFADFETKT LVSASNSQTD DFSNRNDYAN ADDASGTAIR GSIAERRAAK 60 CGFKAERINT ARFRTTSPLN SPAATALVRS PCITIPPGIS PTALLDSPIM LPNSQPSPTT 120 GTFPLPLLNY ESPMLNTVTS ADGDEGCDSG SFRFKPHQDP GSLPEFSTLE IQANNVDFQA 180 GSAEPSMDFE FPVEFSKEAT TDSCAKDSET DVKVLNSMIA SANFSDMQMG HADVGSKQIS 240 LHMEPVSGEN IGTRQPLDHE RGIFRSIGMA RNSEDGYNWR KYGQKQVKGS EYPRSYYKCT 300 HPNCQVKKKI ERSHDGQITE IIYKGAHNHP KPQPSRRAQV GPASSFDEMP EMDEASENRV 360 KVEVGSIWKN PQPGSRDFKA DGLERTSSTS VLTELSDPFS TTQVKSIGTF ESAETPELSS 420 TLVSNDDDDD GATQGSLYVG VDADIEESES KRRKIDSCLV ETSLASRAVR EPRVVVQIES 480 DVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSAGCSVRK HVERASHNLK YVITTYEGKH 540 NHEVPAARNS NNVNSNGSNL PQVTTNTQPA LALTRNANGA KPETQFHELA PGFDRKPIFN 600 NEFLRPSFPG NFSNEMKLGA STIYPLKFPT FQHTMPYNSF DFNRSAIHHS GSIASLVPNF 660 PISLPSTVHA SATVSLSGVD FNYNGKPIGQ GQPFLSGQQL VKPKQEQRDD NLYEGQPIID 720 HVNASQPSSV YQHIMGNFPS

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MDPNPPPQQP STFADFETKT LVSASNSQTD DFSNRNDYAN ADDASGTAIR GSIAERRAAK  60
CGFKAERINT ARFRTTSPLN SPAATALVRS PCITIPPGIS PTALLDSPIM LPNSQPSPTT  120
GTFPLPLLNY ESPMLNTVTS ADGDEGCDSG SFRFKPHQDP GSLPEFSTLE IQANNVDFQA  180
GSAEPSMDFE FPVEFSKEAT TDSCAKDSET DVKVLNSMIA SANFSDMQMG HADVGSKQIS  240
LHMEPVSGEN IGTRQPLDHE RGIFRSIGMA RNSEDGYNWR KYGQKQVKGS EYPRSYYKCT  300
HPNCQVKKKI ERSHDGQITE IIYKGAHNHP KPQPSRRAQV GPASSFDEMP EMDEASENRV  360
KVEVGSIWKN PQPGSRDFKA DGLERTSSTS VLTELSDPFS TTQVKSIGTF ESAETPELSS  420
TLVSNDDDDD GATQGSLYVG VDADIEESES KRRKIDSCLV ETSLASRAVR EPRVVVQIES  480
DVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSAGCSVRK HVERASHNLK YVITTYEGKH  540
NHEVPAARNS NNVNSNGSNL PQVTTNTQPA LALTRNANGA KPETQFHELA PGFDRKPIFN  600
NEFLRPSFPG NFSNEMKLGA STIYPLKFPT FQHTMPYNSF DFNRSAIHHS GSIASLVPNF  660
PISLPSTVHA SATVSLSGVD FNYNGKPIGQ GQPFLSGQQL VKPKQEQRDD NLYEGQPIID  720
HVNASQPSSV YQHIMGNFPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-31	274	546	8	78	Probable WRKY transcription factor 4
2lex_A	2e-31	274	546	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC470014	0.0	KC470014.1 Jatropha curcas WRKY transcription factor 10 (WRKY10) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085758.1	0.0	WRKY transcription factor SUSIBA2 isoform X3
TrEMBL	M9TNR1	0.0	M9TNR1_JATCU; WRKY transcription factor 10
STRING	XP_002514852.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8349	34	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-115	WRKY DNA-binding protein 2

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]