PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00562.120
Common NameJCGZ_21600, LOC105649698, WRKY50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 269aa    MW: 30216.2 Da    PI: 5.9614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00562.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-3079136359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  Jcr4S00562.120  79 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSMLVVTYSCEHNHP 136
                     99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-3173138IPR003657WRKY domain
SuperFamilySSF1182904.32E-2674138IPR003657WRKY domain
SMARTSM007742.4E-3577137IPR003657WRKY domain
PfamPF031066.0E-2679136IPR003657WRKY domain
PROSITE profilePS5081131.98479138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDGRFNNRII TDQKENDNTE SGPDSPPSSS LLNDMKMTST SSSSPKRSKR ATQKRVVSVS  60
LKDVDGSRLK GETAPPPPDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV  120
DPSMLVVTYS CEHNHPWPPP SKTHHHHHHH NNTSTKSHVA KPEISTPSPP EQENPEQEAE  180
PEERFTDLGD ESLVTTDEFS WFGEMETTSS TILESPIFAD ERSTAEAEAS MYYPMREEDE  240
SLFADLGELP ECSAVFRQHR GVGPQVQIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-20791381879Disease resistance protein RRS1
5w3x_D4e-20791381879Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853020.0KC485302.1 Jatropha curcas WRKY transcription factor (WRKY50) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091816.10.0probable WRKY transcription factor 65
SwissprotQ9LP561e-84WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLS5CFV30.0S5CFV3_JATCU; WRKY transcription factor 50.1
STRINGcassava4.1_032956m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-74WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]