PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00560.110 | ||||||||
Common Name | JCGZ_07629, LOC105638105, WRKY14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 164aa MW: 18584.6 Da PI: 5.364 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.3e-31 | 103 | 161 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K vk+s++pr+YYrC+ +gCpvkk+ver+++d+k+v++tYeg Hnh+ Jcr4S00560.110 103 LDDGYKWRKYGKKIVKSSPNPRNYYRCSIEGCPVKKRVERDRDDQKYVITTYEGVHNHP 161 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-33 | 89 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-28 | 96 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.502 | 98 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 103 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-25 | 104 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSESSSNFAP LDTPESDYGD LTNFELSEFL TFDEWVKEDD QSMLSLLPAS NDGNLVFKAL 60 VIGESGDATS SHQHLPATGE GRKEKREAKE RVAFKTKSEV EILDDGYKWR KYGKKIVKSS 120 PNPRNYYRCS IEGCPVKKRV ERDRDDQKYV ITTYEGVHNH PTAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-26 | 93 | 160 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-26 | 93 | 160 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485266 | 1e-129 | KC485266.1 Jatropha curcas WRKY transcription factor 14 (WRKY14) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077228.1 | 1e-120 | probable WRKY transcription factor 50 isoform X2 | ||||
Swissprot | Q8VWQ5 | 2e-42 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | S5CS47 | 1e-119 | S5CS47_JATCU; WRKY transcription factor 14 | ||||
STRING | cassava4.1_032004m | 3e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-42 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Entrez Gene | 105638105 |
Publications ? help Back to Top | |||
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