PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00545.60 | ||||||||
Common Name | JCGZ_02277, LOC105632090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 152aa MW: 17480.2 Da PI: 9.4635 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 2 | 43 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR++ ++ ++ L ++lP +K+ K +i ++A + I++L Jcr4S00545.60 2 CERYRREKEKKEYSALHSMLPLG-----TKNHKNSIMQMAAKRIQEL 43 69*******************97.....79**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 1 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.084 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.31E-5 | 1 | 44 | No hit | No description |
SuperFamily | SSF47459 | 7.72E-9 | 2 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MCERYRREKE KKEYSALHSM LPLGTKNHKN SIMQMAAKRI QELSGYKEAL QRRNHELEVK 60 LAAIGIGNVR STKIKFKVAN PVSGADYIME VLKCLNSLGS KIRTIQSTFS HQELVAVMDI 120 ETEISDADVR KEVQRTLEDA ERKFHFHFPE GC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | RREKEKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069765.1 | 1e-110 | transcription factor bHLH92 | ||||
TrEMBL | A0A067L879 | 1e-108 | A0A067L879_JATCU; Uncharacterized protein | ||||
STRING | XP_002517016.1 | 5e-59 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105632090 |
Publications ? help Back to Top | |||
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