PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00508.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 338aa MW: 37032.1 Da PI: 8.4508 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.3e-21 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae Aa+a+++a+++++g Jcr4S00508.50 147 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 196 8********.**********66.....56************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 146 | 205 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.725 | 147 | 204 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 147 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 147 | 205 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.70E-23 | 147 | 206 | No hit | No description |
SMART | SM00380 | 9.7E-38 | 147 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-12 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-12 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MCFLKVANPR EKGINKNLDE WVYQPSMMLQ QENKSNRNEQ PFGSMLSGLS REREMSAMVS 60 ALTHVVTGEV PADIINNEGN CSGSSSDGAN KRGREEEGGH TKLARSFGYV DRVNNTIDTS 120 TIATTPIMPQ THIYEHNDTV REEPRRKYRG VRQRPWGKWA AEIRDPFKAA RVWLGTFDTA 180 EAAARAYDEA ALRFRGSKAK LNFPENVRLL PSTSNPMTTQ VAISNSQNTL FSVPQMVNNP 240 RLDLGVGGYQ RHQAVSLYDQ MVLSSSNASS HFQTFSFAAS STTYSSSSPQ SSVPLIIPAP 300 RPADLRTATN QSSGGGGSAD ISEPALWSDC GHYTSSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 146 | 207 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075283.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
Swissprot | Q9FGF8 | 6e-39 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A067KSQ1 | 0.0 | A0A067KSQ1_JATCU; Uncharacterized protein | ||||
STRING | XP_002532770.1 | 4e-87 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 3e-26 | ERF family protein |
Publications ? help Back to Top | |||
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