PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00480.60

Common Name

JCGZ_15588

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 307aa MW: 32799.2 Da PI: 6.3126

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00480.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	85	1.9e-26	1	78	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...........k 89 ++a+caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++ + s +ss+s+ s++ Jcr4S00480.60 1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVVAATGTGTIPANFTsLNISLRSSGSSFSAShhlrnsyfnpnL 78 9**********************************************9997666666666633333222222332220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-26	1	95	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.141	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVVAAT GTGTIPANFT SLNISLRSSG 60 SSFSASHHLR NSYFNPNLAA HQHLRSRTDW ERSIAAVDES PQPPQQRRIL FPSEDSLGFS 120 SINSSIELLN KQEVRGSDTT TCLDVSDGET SLGRKRRLEH ELLSQSSHQM GNYLLQSTSA 180 GTIPSTHSPI PATFWMVTNP NSNNSNQVIS GDSMATFPPF TGSNNNMYRG SMSSSLHFMN 240 FPAPMALLPG QQLGGASGGV GGIVTDSHLG VLAALNAYRP IMGSGDASES PASGSNQHHG 300 GEEHEPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067620.1	0.0	transcription factor TCP15
TrEMBL	A0A067KY96	0.0	A0A067KY96_JATCU; Uncharacterized protein
STRING	cassava4.1_024212m	1e-131	(Manihot esculenta)
STRING	XP_002522405.1	1e-131	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	1e-33	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]