PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00460.70

Common Name

JCGZ_25629

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 252aa MW: 28600.2 Da PI: 9.6157

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00460.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.2	6e-26	172	221	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +r+ Wt+eLH+rFv+a+e LGG+e AtPk+i+e+mk++gLt+++vkSHLQ Jcr4S00460.70 172 NRIIWTTELHSRFVDALEFLGGPEAATPKQIKEVMKLEGLTIDQVKSHLQ 221 799*********************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-21	169	221	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-14	170	228	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-23	171	222	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGSCTPSEMR LSLKTSGSYI PKSIANLLKE LSKIDSSSEK LTILNNFLKK HEEELSKVQL 60 FKNELPQCML LILDAIETLK EAVLNIKKGT GFEPGSDERG VMEFFAMKRR GYEIMQREIF 120 DPEEIKIQAV EEPEKSVGYG SLSVIRANDQ TLNFRAKQML LMPRGKPRGK NNRIIWTTEL 180 HSRFVDALEF LGGPEAATPK QIKEVMKLEG LTIDQVKSHL QVSALWMSEW KPTTIVKERP 240 GRLTFNTVGS RN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088165.1	0.0	two-component response regulator-like APRR2
TrEMBL	A0A067JNG1	1e-178	A0A067JNG1_JATCU; Uncharacterized protein
STRING	EOY03817	2e-49	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14866	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	2e-17	G2-like family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]