PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00458.180
Common NameJCGZ_06329, LOC105635035
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 183aa    MW: 19738 Da    PI: 4.0042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00458.180genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.12.1e-132441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Jcr4S00458.180  2 RSWGKWVLEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMSIKG 44
                    57**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-25158IPR001471AP2/ERF domain
CDDcd000185.98E-26153No hitNo description
PROSITE profilePS5103219.664152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-25153IPR001471AP2/ERF domain
PfamPF008474.4E-8244IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-16252IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRSWGKWVLE IREPRKKSRI WLGTFPTAEM AARAHDVAAM SIKGNAAILN FPEIVDSLPR  60
PVSLMPRDIQ AAAAKAASMV EFNSLSSSSS SSSLLSESSS SSSSSSVSVS DDVSESEELS  120
EIVELPNIEG SFDSAESVTE FILFDSVDGW VYPPPQDMCG EFSDQLMGLE SLISSNFGAS  180
VWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-162532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073419.11e-127dehydration-responsive element-binding protein 3
SwissprotQ9LYD38e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A067KQN01e-125A0A067KQN0_JATCU; Uncharacterized protein
STRINGXP_002515992.17e-80(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]