PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00435.10 | ||||||||
Common Name | JCGZ_26269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 335aa MW: 37665 Da PI: 8.5401 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Jcr4S00435.10 205 YKCQTCKKRFRSYQALGGHKASH 227 9***********99998888877 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 258 | 280 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k+F + L H ++H Jcr4S00435.10 258 FKCPFCDKVFDSGQALGGHKKVH 280 89**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.38 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.1E-7 | 6 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.047 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-11 | 205 | 229 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.08E-7 | 205 | 280 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0071 | 258 | 280 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.5E-9 | 258 | 280 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 258 | 280 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 260 | 280 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEKNRICRIC NRRFANGKAM GGHMRSHLAK LPLPPKPISS QLYPSPKSPS PSSSSSFNYP 60 LTDQNPMQSY RSVNHELPFM SKANLANDGE SETESSPRNN NPTRRRSKRR RKSAEKVAES 120 VLKSAESPEQ VSSISSDFFN EEDVAMCLLM LSRDKRTIVK QVAYDHSYTI QEYRDEIEDE 180 DETFEDDDES FGLIHVGSNK SQGKYKCQTC KKRFRSYQAL GGHKASHKKM KTHDLYVEGS 240 GSGSRSGAVM AIDQPRIFKC PFCDKVFDSG QALGGHKKVH FSYLGNNCNS NNNSDTKISV 300 KFTDDLLDLN LPAPEDDGEV SQELSTLSKA YHLRN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540821.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A067JI04 | 0.0 | A0A067JI04_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_023535m | 1e-106 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 3e-35 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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