PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00425.180
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 275aa    MW: 31947.8 Da    PI: 7.5002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00425.180genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30114174158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgynWrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++dp+++e+tY+g+H++
  Jcr4S00425.180 114 LDDGYNWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSNQDPTIFEVTYRGRHTC 174
                     59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-29108175IPR003657WRKY domain
PROSITE profilePS5081123.801109172IPR003657WRKY domain
SuperFamilySSF1182904.71E-26113174IPR003657WRKY domain
SMARTSM007741.5E-41114176IPR003657WRKY domain
PfamPF031062.0E-27115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDREQKTLIS ELTQGKEHTE QLRKHLTSLS SPETRQFLVE KILSSYEKAL SILNWETKPS  60
ISALESPHSC ANSSPRSEIS DQEFQRDVYK KRKTQPRWTE QVKVCSGMGL EGPLDDGYNW  120
RKYGQKDILG ANFPRGYYRC THRHSQGCLA TKQVQRSNQD PTIFEVTYRG RHTCFQAARL  180
AASINDKSQQ GEDNCLVERQ QQHEEGKPKL LKEISFNYRE GLSKSDDLEI FPPFSLNEEN  240
DIFKNAWKEI LKEVLESRVV PSQKIFQLIR EFSDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191141721474Disease resistance protein RRS1
5w3x_D4e-191141721474Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492QRDVYKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853031e-175KC485303.1 Jatropha curcas WRKY transcription factor (WRKY51) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083322.11e-180probable WRKY transcription factor 30
TrEMBLS5CKC91e-179S5CKC9_JATCU; WRKY transcription factor 51.1
STRINGcassava4.1_010768m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-51WRKY DNA-binding protein 30