PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00424.30
Common NameJCGZ_21436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LSD
Protein Properties Length: 169aa    MW: 18395 Da    PI: 6.4841
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00424.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.84.1e-144973125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg+Cr lLsYPrGA++VRC++C+ V
  Jcr4S00424.30 49 CGSCRSLLSYPRGARHVRCSCCQMV 73
                   ***********************88 PP

2zf-LSD1437.5e-1487111125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+C +lL+YP+GA+sV+C++C++V
  Jcr4S00424.30  87 CGKCTVLLMYPYGASSVQCSSCHFV 111
                    ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.7E-164676IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-114973IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.6E-1184112IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-1287111IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKSTEAEAMV EEKHEEEEGP PPGWQSIPPA EPSAPPHRPP SSEMAQMVCG SCRSLLSYPR  60
GARHVRCSCC QMVNFVLEAH EVGQVNCGKC TVLLMYPYGA SSVQCSSCHF VTEIGEATMV  120
CNSGAPSPNF KCCSVSGLRG VLILKTAGRI WHRNWMVFTS SDDGFPARE
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091597.12e-78protein LOL2
SwissprotO654269e-35LOL2_ARATH; Protein LOL2
TrEMBLA0A067JLS41e-121A0A067JLS4_JATCU; Uncharacterized protein
STRINGXP_009338990.15e-42(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-34lsd one like 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]