PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00424.30 | ||||||||
Common Name | JCGZ_21436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LSD | ||||||||
Protein Properties | Length: 169aa MW: 18395 Da PI: 6.4841 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.8 | 4.1e-14 | 49 | 73 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++VRC++C+ V Jcr4S00424.30 49 CGSCRSLLSYPRGARHVRCSCCQMV 73 ***********************88 PP | |||||||
2 | zf-LSD1 | 43 | 7.5e-14 | 87 | 111 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sV+C++C++V Jcr4S00424.30 87 CGKCTVLLMYPYGASSVQCSSCHFV 111 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.7E-16 | 46 | 76 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-11 | 49 | 73 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.6E-11 | 84 | 112 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-12 | 87 | 111 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKSTEAEAMV EEKHEEEEGP PPGWQSIPPA EPSAPPHRPP SSEMAQMVCG SCRSLLSYPR 60 GARHVRCSCC QMVNFVLEAH EVGQVNCGKC TVLLMYPYGA SSVQCSSCHF VTEIGEATMV 120 CNSGAPSPNF KCCSVSGLRG VLILKTAGRI WHRNWMVFTS SDDGFPARE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091597.1 | 2e-78 | protein LOL2 | ||||
Swissprot | O65426 | 9e-35 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A067JLS4 | 1e-121 | A0A067JLS4_JATCU; Uncharacterized protein | ||||
STRING | XP_009338990.1 | 5e-42 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-34 | lsd one like 2 |
Publications ? help Back to Top | |||
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