PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00377.20
Common NameJCGZ_04510, LOC105633878
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family DBB
Protein Properties Length: 312aa    MW: 34203.2 Da    PI: 6.7197
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00377.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07443538
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    C+ +++ e++ fC+ ++  lC+ C    H+       H+
  Jcr4S00377.20  4 QCDVCSKDEASVFCTADEAVLCDACDHRVHHAnklaskHQ 43
                   7******99******************9964446666676 PP
2zf-B_box27.65.9e-095692438
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                   + C+ ++ek++ lfC++++  lC+dC + +Hk   Ht
  Jcr4S00377.20 56 PLCDVCQEKRAFLFCQQDRAILCRDCDVPIHKAneHT 92
                   78*****************************878865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.836147IPR000315B-box-type zinc finger
CDDcd000212.50E-6347No hitNo description
SMARTSM003364.4E-6447IPR000315B-box-type zinc finger
PfamPF006433.0E-5443IPR000315B-box-type zinc finger
PROSITE profilePS5011910.06853100IPR000315B-box-type zinc finger
SMARTSM003361.0E-1453100IPR000315B-box-type zinc finger
CDDcd000214.54E-1156100No hitNo description
PfamPF006434.4E-75692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKIQCDVCSK DEASVFCTAD EAVLCDACDH RVHHANKLAS KHQRFSLLHP SSKNFPLCDV  60
CQEKRAFLFC QQDRAILCRD CDVPIHKANE HTQKHNRFLL TGVKLSATSA LYMSSSSSAS  120
DVNSSDLVPD SKQSQHQPSV KPVSVSLPKS NLSSIGKTLP SNSTVNKNLS SNTSVNRDGD  180
NLVISDGIGS TSSISEYLME TLPGWQLDEL DFPSTPFAGF CKPDDDGMLP FVDTDIGSNS  240
IISPFSSETM GIWVPQAHPT QHYQQIGGQI GLKETKGTTN TKVNYRRWSD DAFTVPQISP  300
QSTGSKRSSP FW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071969.10.0B-box zinc finger protein 21
SwissprotQ9LQZ76e-85BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A067L2700.0A0A067L270_JATCU; Uncharacterized protein
STRINGcassava4.1_011628m1e-164(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-73salt tolerance homolog2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  3. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  4. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  5. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  6. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  7. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]