PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00361.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 276aa    MW: 30038.4 Da    PI: 9.0564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00361.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-11154201455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Jcr4S00361.90 154 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-10148205No hitNo description
SuperFamilySSF474596.8E-18148219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-18150219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDPPAMMNNG SYNLAEIWQF PVNANGRGQF GQSLSGQFGD SNGDILRNDP MNLEQRGTRG  60
GGGGRKRRDV AEDDSAKVLS SSNVNGNGNG NGNRVNDSDA KRLKTSGNRD ENHDSKTEAE  120
PSSGKPVEQN TQPPEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC  180
NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSKMNP GIEAFPSKDF GLTFDTTGVA  240
FGITSHKGIQ PRCITGVVAY AGFNAILYTK NSNTAS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091989.11e-179transcription factor bHLH79
SwissprotQ0JXE75e-74BPE_ARATH; Transcription factor BPE
TrEMBLA0A067JMN61e-178A0A067JMN6_JATCU; Uncharacterized protein
STRINGcassava4.1_013929m1e-131(Manihot esculenta)
STRINGcassava4.1_013977m1e-131(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-73BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]