PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00344.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 235aa    MW: 25805.8 Da    PI: 9.8689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00344.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.4e-213484155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  Jcr4S00344.50 34 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 84
                   68********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-133484IPR001471AP2/ERF domain
CDDcd000181.63E-193492No hitNo description
SuperFamilySSF541711.5E-223594IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-323593IPR001471AP2/ERF domain
SMARTSM003803.0E-373598IPR001471AP2/ERF domain
PROSITE profilePS5103223.633592IPR001471AP2/ERF domain
PRINTSPR003679.2E-113647IPR001471AP2/ERF domain
PRINTSPR003679.2E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRRGRVATAA ASAAKQVVEP NGSVPQNSIK GKEPRYRGVR KRPWGRFAAE IRDPWKKTRV  60
WLGTFDSAED AARAYDAAAR SLRGSKAKTN FPFSTSQLSP FTYQNPSDTL IDHRLYTSNG  120
FQEHHVNPQR PTSSSQSSTV ESFSGPRPPV PATTTKKSGL LLTTTAPRKY HRKTPPVVPE  180
DCHSDCDSSS SVADNGDIAS SSSLCRKPLP FDLNFPPLDQ VDFPIDDLQC TALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213093264ATERF1
3gcc_A3e-213093264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070900.11e-174ethylene-responsive transcription factor 3
SwissprotQ9LDE48e-55ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A067KSS61e-160A0A067KSS6_JATCU; Uncharacterized protein
STRINGcassava4.1_015279m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-30ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]