PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00312.130
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 376aa    MW: 42479.9 Da    PI: 6.2014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00312.130genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13174225155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Jcr4S00312.130 174 QRMTHITVERNRRRQMNDHLNSLRSLMPPS---YVQRGDQASIIGGAIDFVKELE 225
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.86E-11172228No hitNo description
SuperFamilySSF474591.14E-16173247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428173224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-13174240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGSLPSASCS SAVMERLQGP IDPCFLGENL GTEILRFEEE EANFSMPSLE DKMPYITETD  60
SHVQALELES CITHDIADNL HSPVKFETKD FQNPHSNPCL ESVSPNSNHR QANSMQRFCK  120
QRSSVSVSSF SWTNPQTTML NETQFSKSSP LVPRERKKRK RTRPTKNKEE VESQRMTHIT  180
VERNRRRQMN DHLNSLRSLM PPSYVQRGDQ ASIIGGAIDF VKELEQLLNS LEAQKRMRKT  240
EETAANMGIS SSGLFTSQIE GKIQRESSNF EEELKVKRTS EAAEIEVTAI QNHVNLKIQC  300
ERSPGLLLRA IVALEDLKLT VLHLNITSSE TRVLYSFNLK IEDDCKLESA DEVAATVHEI  360
FSIINGRVGD RKLELG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RKKRKR
2156161KKRKRT
3174185RMTHITVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083091.10.0transcription factor bHLH57
SwissprotQ9M1284e-71BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A067JWQ50.0A0A067JWQ5_JATCU; Uncharacterized protein
STRINGcassava4.1_009158m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.15e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]