PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00240.250 | ||||||||
Common Name | JCGZ_08069, LOC105635214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WOX | ||||||||
Protein Properties | Length: 208aa MW: 23715.7 Da PI: 4.9109 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 72 | 132 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++ ql++Le+ F n +p++++++e++++l ++e++V++WFqNrRa+ k+ Jcr4S00240.250 72 RQRWAPKAAQLQILESIFGDcNTTPDRQKIREITSELakhgPVSETNVYNWFQNRRARSKR 132 89*****************88******************999*****************97 PP | |||||||
2 | Wus_type_Homeobox | 90.4 | 1.7e-29 | 71 | 134 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P++ Q++iLe+++ tP +++i++it+eL+++G ++++NV++WFQNr+aR+++kq Jcr4S00240.250 71 SRQRWAPKAAQLQILESIFGDCNTTPDRQKIREITSELAKHGPVSETNVYNWFQNRRARSKRKQ 134 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-15 | 68 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.009 | 68 | 133 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-16 | 70 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.1E-13 | 70 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.41E-12 | 72 | 134 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 72 | 132 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MENGVVGVKV MTDEQMEMLR KQISVYATIC ENLVQMHQAI CSQQDFTGIQ VANLYGYSGP 60 YISNGLQRIP SRQRWAPKAA QLQILESIFG DCNTTPDRQK IREITSELAK HGPVSETNVY 120 NWFQNRRARS KRKQAALPTL TNTGESQAEP AEDKNTNQDD TIAQMDESLE FMVNDMYFQN 180 PEIQGIEQLI GRPEVTINYK PHWPDLFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073636.1 | 1e-157 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-54 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A067KP72 | 1e-156 | A0A067KP72_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_016031m | 2e-85 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-48 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Entrez Gene | 105635214 |
Publications ? help Back to Top | |||
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