PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00232.120

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 661aa MW: 75179.1 Da PI: 6.3691

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00232.120	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	270	7.8e-83	280	646	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 l +lLl+ Ae v +++ +a++lL+r + ++s++++p+qR++ +f+eAL++r+ + + + p +++++ + +++ a ++ Pi +++ Jcr4S00232.120 280 LAHLLLASAEKVGYQQFDRASRLLSRCEWISSERANPVQRVVYCFAEALRERIDK---ATGRFTPKKRSAKCDgLISTNLACLSVHQKVPINQIT 371 579*************************************************9...4444444444444444444444444489999** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +lt qaIle + +++++H iD++i G+QW a++qaLa+R+ ++ +l++T+v ++ +++++e+tg rL++fA+++++pf f+++ +++++d Jcr4S00232.120 372 QLTSIQAILENMGSARKLHLIDLEIRSGVQWTAMMQALAEREqRPLEHLKVTAVCLAS--NQKNTEATGGRLESFAKSMNLPFTFKLVNVTTMND 464 *************************************945556*****55..999**************************** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ e +++ +E+l+V + l ++ ++ +le+ +++++k+l+P +++v+e ea+hns+ F++rf+eal +ysa fd+le+ + ++ e+++ Jcr4S00232.120 465 IKEELFEIAADESLVVVSNSFLRSFIPNPDCLEN----LMRVIKNLNPSMMIVAEVEANHNSPIFVNRFIEALFFYSAYFDCLETCMDQNLEHKS 555 **********************88888888....********************************************988889999 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ +++ i++ +a +er r+ + e Wr+ ++++ + ++ +se+ qa+l+l++++ + +++++ ++l+lgWk+ pL s+SaW+ Jcr4S00232.120 556 AIEAL-FSKGIRETLALDDNERLTRNVKIEVWRAFFTRFKMVEIGFSESSLYQASLVLKQYPcGSSCTLDKNGKCLILGWKGTPLHSLSAWK 646 99887.****************************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50188	8.843	1	132	IPR001870	B30.2/SPRY domain
PROSITE profile	PS50985	38.43	254	625	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-80	280	646	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MLYWCRMVVK PVVDDTIFGV AKEEKWVQRV AVAMSFGGLW WWRLRDEVES LVIVAESKRE 60 ISVGIAVGDF LASFSEMANA LFSFSPFDFS GIQGDCSPFE DYRMKEKQDP LFSMEELGQV 120 YPLCTEYGAY QDKGLHFFKD QQPPPPPTLP PKSNCLTLDE YFDSCFPVPA QQMQEVKKSE 180 NIAKSGHPFA LSSSLELLNN YGSGIKKLNQ NQNQNQFSNV SSETIVEARK KLSTEEIMRV 240 AGARYIQFSD QRNDDFSMLM HPFGYALSGL SEEESRDVEL AHLLLASAEK VGYQQFDRAS 300 RLLSRCEWIS SERANPVQRV VYCFAEALRE RIDKATGRFT PKKRSAKCDG LISTNLACLS 360 VHQKVPINQI TQLTSIQAIL ENMGSARKLH LIDLEIRSGV QWTAMMQALA EREQRPLEHL 420 KVTAVCLASN QKNTEATGGR LESFAKSMNL PFTFKLVNVT TMNDIKEELF EIAADESLVV 480 VSNSFLRSFI PNPDCLENLM RVIKNLNPSM MIVAEVEANH NSPIFVNRFI EALFFYSAYF 540 DCLETCMDQN LEHKSAIEAL FSKGIRETLA LDDNERLTRN VKIEVWRAFF TRFKMVEIGF 600 SESSLYQASL VLKQYPCGSS CTLDKNGKCL ILGWKGTPLH SLSAWKFSRE RLGRFFANYR 660 F

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MLYWCRMVVK PVVDDTIFGV AKEEKWVQRV AVAMSFGGLW WWRLRDEVES LVIVAESKRE  60
ISVGIAVGDF LASFSEMANA LFSFSPFDFS GIQGDCSPFE DYRMKEKQDP LFSMEELGQV  120
YPLCTEYGAY QDKGLHFFKD QQPPPPPTLP PKSNCLTLDE YFDSCFPVPA QQMQEVKKSE  180
NIAKSGHPFA LSSSLELLNN YGSGIKKLNQ NQNQNQFSNV SSETIVEARK KLSTEEIMRV  240
AGARYIQFSD QRNDDFSMLM HPFGYALSGL SEEESRDVEL AHLLLASAEK VGYQQFDRAS  300
RLLSRCEWIS SERANPVQRV VYCFAEALRE RIDKATGRFT PKKRSAKCDG LISTNLACLS  360
VHQKVPINQI TQLTSIQAIL ENMGSARKLH LIDLEIRSGV QWTAMMQALA EREQRPLEHL  420
KVTAVCLASN QKNTEATGGR LESFAKSMNL PFTFKLVNVT TMNDIKEELF EIAADESLVV  480
VSNSFLRSFI PNPDCLENLM RVIKNLNPSM MIVAEVEANH NSPIFVNRFI EALFFYSAYF  540
DCLETCMDQN LEHKSAIEAL FSKGIRETLA LDDNERLTRN VKIEVWRAFF TRFKMVEIGF  600
SESSLYQASL VLKQYPCGSS CTLDKNGKCL ILGWKGTPLH SLSAWKFSRE RLGRFFANYR  660
F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-34	288	645	27	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405284	0.0	KM405284.1 Jatropha curcas GRAS39 protein (GRAS39) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020538341.1	0.0	DELLA protein RGL1
TrEMBL	A0A2C9VTI7	0.0	A0A2C9VTI7_MANES; Uncharacterized protein
STRING	cassava4.1_024370m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	3e-53	RGA-like 2