PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00232.110

Common Name

JCGZ_14037, LOC105642630, WRKY46

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 278aa MW: 31396.5 Da PI: 4.4894

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00232.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.3	1.5e-23	54	108	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr C+++ gC++kk+ver+++d +v++itY+++Hnh+ Jcr4S00232.110 54 SDFWSWRKYGQKPIKGSPYPR----CSTSkGCSAKKQVERCRTDASVLIITYTSTHNHP 108 699*************996....87777**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-25	47	110	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-20	51	110	IPR003657	WRKY domain
SMART	SM00774	3.4E-29	53	109	IPR003657	WRKY domain
PROSITE profile	PS50811	24.88	54	110	IPR003657	WRKY domain
Pfam	PF03106	1.7E-18	55	108	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDGSSGTSLE LDSKVSEPKS ETQASKRRKV VEKTVVKVKI GANAGKLKNE GPPSDFWSWR 60 KYGQKPIKGS PYPRCSTSKG CSAKKQVERC RTDASVLIIT YTSTHNHPGP DLHATNLINQ 120 QEQPKESQNQ KQPSTTKDHS PTTTEEEEED EEEENQNQPI VENEIIHKND NIEDGNDFHY 180 LQSSPLSCTQ DMMISQEDPF IEKKPDAEQT HENDTLGILL DEEPIVSSCP TLMTFSTPSK 240 SEENDFFDEL EELPTYSAFT SFFMRSNFYD ERIPVVPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-15	54	110	17	79	Disease resistance protein RRS1
5w3x_D	6e-15	54	110	17	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485298	0.0	KC485298.1 Jatropha curcas WRKY transcription factor 46 (WRKY46) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082905.1	0.0	probable WRKY transcription factor 35
TrEMBL	S5CS82	0.0	S5CS82_JATCU; WRKY transcription factor 46
STRING	XP_002515275.1	1e-109	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9708	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	1e-28	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	105642630

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]