PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00224.30
Common NameJCGZ_05603, LOC105628165
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 530aa    MW: 58505.9 Da    PI: 6.3276
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00224.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.4e-17177226155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ +++g
  Jcr4S00224.30 177 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIRFRG 226
                    78*******************......55***********************9997 PP
2AP2414.7e-13269319155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Jcr4S00224.30 269 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 319
                    89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-9177226IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15177235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-17178234IPR001471AP2/ERF domain
PROSITE profilePS5103217.859178234IPR001471AP2/ERF domain
SMARTSM003804.3E-32178240IPR001471AP2/ERF domain
CDDcd000187.89E-26269329No hitNo description
PfamPF008471.4E-8269319IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17269328IPR016177DNA-binding domain
PROSITE profilePS5103215.527270327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15270327IPR001471AP2/ERF domain
SMARTSM003804.9E-32270333IPR001471AP2/ERF domain
PRINTSPR003676.1E-6271282IPR001471AP2/ERF domain
PRINTSPR003676.1E-6309329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLDLNLNVDL AESTQNSDSV ALMNKYQYQQ YHDPEGSGTS NSSVVNADAS SNDDSCSTRA  60
YTGDASNSSI NNSCVYTFNF DILKVGVGGN CGRGNEDENE NDAVVTKEFF PVCGNGKGVG  120
GDYANSLGQA GQGSSRNWID LSFEKQQDIG DREVRVIQQP PPQQVKKSRR GPRSRSSQYR  180
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIRFRGVDAD INFSLSDYEE  240
DLKQMKNLTK EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF  300
DSEVEAARAY DKAAIKCNGR EAVTNFEPSA YEGEMVSEAI NEGSEHNLDL NLGISPALGN  360
GPKENEGHLQ FHFGPFDMDS KSSRSIRFQN VVFVSMLLDC HGEENSSVAM VGDLPFKGPL  420
RTPDHPIFWN GVYSNFFPNE ERATEKRIEL GSPQGVPNWA WQMHGQVTAT PMTMFSTAAS  480
SGFSFAATPP SAAILPSKPL NPAPHHLYFP PPATITTSAS QFYCPVKPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064916.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_012064917.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_020532581.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-126RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A067L6P30.0A0A067L6P3_JATCU; Uncharacterized protein
STRINGcassava4.1_006069m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-127related to AP2.7
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]