PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00190.100

Common Name

JCGZ_26386, LOC105648738

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 363aa MW: 40591.6 Da PI: 7.5337

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00190.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	188	235	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++sLq Jcr4S00190.100 188 SHSLAERVRREKISERMKILQKIVPGC----DKVTGKALMLDEIINYVQSLQ 235 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.45E-9	182	239	No hit	No description
SuperFamily	SSF47459	3.27E-16	182	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	184	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	188	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-10	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MATFSSNQHY PSHLDSVFLP NTPFKNLSGF MEEANIINNT NSFSQFYPPH QQDFPQIESP 60 PDVRFYYAAT SLLDHNNSSM VALSDNEPSV TKKQSTESST VVDKLESGEQ VTQMVTPMPK 120 KRKYSNGSSC NNSSQSKDGR DGRSKKQRKC NSKKEEDKKP KAEKKVTEQE PPTGYIHVRA 180 RRGQATDSHS LAERVRREKI SERMKILQKI VPGCDKVTGK ALMLDEIINY VQSLQNQVEF 240 LSLKLASVNP LFYDFGMDLD ALMVRPEGLM GNLAPSLPPM QQCTTATATA TATATTTPIT 300 TTTATFATAN NYPLIDSSAL LLLQEQRPND FIQDSNSLLW DVDEQRQKFL NPSGFTNNLC 360 SFH

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MATFSSNQHY PSHLDSVFLP NTPFKNLSGF MEEANIINNT NSFSQFYPPH QQDFPQIESP  60
PDVRFYYAAT SLLDHNNSSM VALSDNEPSV TKKQSTESST VVDKLESGEQ VTQMVTPMPK  120
KRKYSNGSSC NNSSQSKDGR DGRSKKQRKC NSKKEEDKKP KAEKKVTEQE PPTGYIHVRA  180
RRGQATDSHS LAERVRREKI SERMKILQKI VPGCDKVTGK ALMLDEIINY VQSLQNQVEF  240
LSLKLASVNP LFYDFGMDLD ALMVRPEGLM GNLAPSLPPM QQCTTATATA TATATTTPIT  300
TTTATFATAN NYPLIDSSAL LLLQEQRPND FIQDSNSLLW DVDEQRQKFL NPSGFTNNLC  360
SFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090613.1	0.0	transcription factor bHLH137
TrEMBL	A0A067JRD3	0.0	A0A067JRD3_JATCU; Uncharacterized protein
STRING	cassava4.1_023959m	1e-169	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-59	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105648738

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]