PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00188.20

Common Name

JCGZ_05852

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 389aa MW: 43990.2 Da PI: 7.6298

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00188.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.3	1.6e-39	127	279	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec...eaesssssas 83 k+drhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl qa aik+l + ssss sec + ++ Jcr4S00188.20 127 SKRDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSGgipnysssvpskSSSSTSECevvS-------GN 215 69***********************************************************777777655443333334442221.......11 PP TCP 84 nsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 +s + + +++ +k ++ +++ ++ la+esr karararertrek +++ Jcr4S00188.20 216 DES-AaikatiakgkpsssSFLNNKGVKKAKTLRKTVFHPLARESRVKARARARERTREKLWNRK 279 112.134555666666543333333333444444555799999***************99884 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-43	127	275	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.414	128	186	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.859	257	274	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MFPSSNNGYD PIYYYNEQQG FNRPFSNDIT FNSKHDQEQE PPSPSLFSFF HLPPLSPYGH 60 LEFQDYDLSL HQNHDCLLSH HQQQPLMISF DSETTTMLDS DKNDFKNKKC HNNITTTTAT 120 LTPKRSSKRD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLCFDKASK TVEWLLDQAR 180 SAIKKLSSGG IPNYSSSVPS KSSSSTSECE VVSGNDESAA IKATIAKGKP SSSSFLNNKG 240 VKKAKTLRKT VFHPLARESR VKARARARER TREKLWNRKL DESKPCEEGR DQELNQLSIC 300 DQESGNNTIN NPSLIMQLAH EVEAPSSHGQ DHHPLVTIAN TTTAESMNMI DDSLVIMEKW 360 NPSSPMINYL YNTGMPQEVI SSCDLDALL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MFPSSNNGYD PIYYYNEQQG FNRPFSNDIT FNSKHDQEQE PPSPSLFSFF HLPPLSPYGH  60
LEFQDYDLSL HQNHDCLLSH HQQQPLMISF DSETTTMLDS DKNDFKNKKC HNNITTTTAT  120
LTPKRSSKRD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLCFDKASK TVEWLLDQAR  180
SAIKKLSSGG IPNYSSSVPS KSSSSTSECE VVSGNDESAA IKATIAKGKP SSSSFLNNKG  240
VKKAKTLRKT VFHPLARESR VKARARARER TREKLWNRKL DESKPCEEGR DQELNQLSIC  300
DQESGNNTIN NPSLIMQLAH EVEAPSSHGQ DHHPLVTIAN TTTAESMNMI DDSLVIMEKW  360
NPSSPMINYL YNTGMPQEVI SSCDLDALL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012093047.1	0.0	transcription factor CYCLOIDEA
TrEMBL	A0A067JBI1	0.0	A0A067JBI1_JATCU; Uncharacterized protein
STRING	cassava4.1_032556m	1e-108	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6564	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-24	TCP domain protein 12

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]