PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00170.120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TALE | ||||||||
Protein Properties | Length: 237aa MW: 26858.4 Da PI: 8.372 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.1e-08 | 188 | 220 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Jcr4S00170.120 188 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 220 59*****************************87 PP | |||||||
2 | ELK | 29.8 | 1.3e-10 | 141 | 162 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Jcr4S00170.120 141 ELKHELKQGYKEKIVDIREEIL 162 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 2.8E-13 | 35 | 84 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.8E-11 | 45 | 83 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 141 | 161 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.7E-7 | 141 | 162 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 141 | 162 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 161 | 224 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-16 | 163 | 225 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.4E-11 | 163 | 228 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-11 | 164 | 225 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 168 | 225 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.2E-18 | 181 | 220 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPSHKYNGN SCWGGLICFL NKSPNKMSLS NFCLGGLEKS PSKTHYVILL CSFKDQLQQH 60 VRVHAMEAVM ACWELEQSLQ SLTGASLAEG TGATMSDDDD DQADSDTNLY DGSLDGSDCM 120 GFGPLVPTET ERSLMEHVRK ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSLLKA 180 WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNSSGAT LKSKRKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 236 | RKRNWHSNSSGATLKSKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081099.1 | 1e-142 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 1e-118 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A067K1T0 | 1e-140 | A0A067K1T0_JATCU; Uncharacterized protein | ||||
STRING | VIT_11s0118g00800.t01 | 1e-125 | (Vitis vinifera) | ||||
STRING | GSMUA_Achr7P05170_001 | 1e-125 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 1e-113 | KNOTTED1-like homeobox gene 4 |
Publications ? help Back to Top | |||
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