PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00135.160 | ||||||||
Common Name | JCGZ_23512, WRKY40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 36146.2 Da PI: 9.783 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.3 | 2.3e-31 | 253 | 310 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ed +++++tYegeHnh+ Jcr4S00135.160 253 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDSSMLIVTYEGEHNHS 310 9*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.5E-18 | 204 | 249 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-34 | 239 | 310 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.666 | 246 | 312 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-27 | 249 | 310 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-38 | 251 | 311 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-27 | 253 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEEIEEANKA AIESCHRVID LLCTSLGHGR VRKLNKFRSS LPQNIFLDSP NCKTILAPKP 60 LQMVPANFLE TPLPEIDSKT TSCLHPSKKM FLENPVLEMN SNVRPPLQIA QIKPSQQYQF 120 LQQQQQIQRM QFQQQQQMKY QADMIYSRSN SGINLKFDGS TCTPTVSSTR SFISSLSMDG 180 NFDGDSFHLI GVPQSSDQIS QQTRRRCSGR GEDGSVKCGS TGKCHCSKRR KLRVKRSIKV 240 PAISNKVADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSL RGCPARKHVE RCLEDSSMLI 300 VTYEGEHNHS RLLSSQSAHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 249 | 309 | 12 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485292 | 0.0 | KC485292.1 Jatropha curcas WRKY transcription factor 40 (WRKY40) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540475.1 | 0.0 | probable WRKY transcription factor 39 | ||||
Swissprot | Q9SR07 | 1e-117 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | S5CKG9 | 0.0 | S5CKG9_JATCU; WRKY transcription factor 40 | ||||
STRING | POPTR_0013s03990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-110 | WRKY DNA-binding protein 39 |
Publications ? help Back to Top | |||
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