PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00117.150

Common Name

JCGZ_04439, LOC105633804

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

ZF-HD

Protein Properties

Length: 302aa MW: 33820.5 Da PI: 8.1644

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00117.150	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.9	2.1e-32	79	136	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eCl+NhAas+Gg+++DGCgEfmp geegt +alkCaAC+CHRnFHR+ev+ e Jcr4S00117.150 79 SNVRYRECLRNHAASVGGNVFDGCGEFMPG-GEEGTLEALKCAACDCHRNFHRKEVDGE 136 689************************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.8E-30	80	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	81	134	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.4E-29	82	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.715	83	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.38E-19	215	284	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-30	223	285	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.7E-29	224	281	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MELRGQENDI RASLPSSYST HHSSGASERR RDGNHNGNTT LTYTQTLDHP NRQPSLTQAR 60 SPNPDRLSTI SKGSNSKTSN VRYRECLRNH AASVGGNVFD GCGEFMPGGE EGTLEALKCA 120 ACDCHRNFHR KEVDGESQFS PSSRRSTMVH SLQLPPPLPS PTVLHHQRYS MGLHNSPTAA 180 NMVQPMTVAF GGGGGGTESS SEDLNAFQSN AEGVPPPPPY VLSRKRFRTK FTQEQKDRMM 240 EFAEKVGWRI NKQDEEEVEK FCAEVGVKRQ VFKVWMHNNK NLKKQQQQQQ QEQELEQGQE 300 PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-24	225	281	18	74	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00238	DAP	Transfer from AT1G75240	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071869.1	0.0	zinc-finger homeodomain protein 5
Swissprot	Q9FRL5	3e-69	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A067L339	0.0	A0A067L339_JATCU; Uncharacterized protein
STRING	cassava4.1_022551m	1e-165	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	5e-71	homeobox protein 33

Link Out ? help Back to Top
Entrez Gene	105633804

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]