PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00115.140

Common Name

JCGZ_19008, LOC105643680

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 476aa MW: 53549.8 Da PI: 6.5882

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00115.140	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.7	3.4e-78	102	471	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilk 92 v lLl+ A+ v +++ +a+ lL + l+s +g++++R++ yf eAL++r++r++ ++ ++ ++ ++ n +e+++a ++ + P+++ Jcr4S00115.140 102 VGLLLKSADKVGNQQYDCANILLDECDGLSSCTGNAVERIVYYFSEALRERINRQTGRIPSQ-DLEKLKSFNIDEQIMAPTAsllaCYRGVPFHQ 195 679*************************************************66666543.3344444567777777666666688999 PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 ++h++ qaI+e v++++++H iD++i G +W +L+qaLasR+e p +++iT++g ++++ +e tg+rL++f e++ +pf f++++++++ Jcr4S00115.140 196 VAHFAGIQAIVENVAEAKKIHMIDLGIRFGDHWTCLMQALASRSECPLeQFKITAIGT---TKRQLIEDTGKRLEEFSETICLPFCFKIVMVSDI 287 ****************************************66544*****...579999************************ PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 dl+ + ++++ +E++a + + + +l +l+++ d+++k++++l+P ++vv+e e+ ++s+sF++ f+eal y+sa fd+lea + ++ + Jcr4S00115.140 288 LDLKEDLFELDDDETVAMYSGYFIRTLI----PLPDRLDSMMKVIRNLNPCIMVVIEPEVYTSSPSFVNCFIEALFYFSAYFDCLEACM-GDDPN 377 ******************999998....89999999********************************************97.7889 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ri +E +g +i+n va+e er+ ++ +l+ W + l ++G+++ +ls++ +q +l+ ++++ ++ ++ + +sl++gWk+rp++s+S+W+ Jcr4S00115.140 378 RIIIESSHFGDAIRNNVATELGERKSQCSNLNVWGRLLARFGMEETELSSSSLCQGNLVAKTFAgGNSCVLDMDGKSLLIGWKGRPMISLSSWK 471 **************************************************************88999999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.207	75	450	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-75	102	471	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MLFNPKKEKQ VQFSPTSFRL LKAYRKGLKR TSSQKIIDPA IGKPTAKETS EGLSIEEIIR 60 IAGKRFVRTL TKPVNFASMH NHHIDVCYSG LSTEDAERVH LVGLLLKSAD KVGNQQYDCA 120 NILLDECDGL SSCTGNAVER IVYYFSEALR ERINRQTGRI PSQDLEKLKS FNIDEQIMAP 180 TASLLACYRG VPFHQVAHFA GIQAIVENVA EAKKIHMIDL GIRFGDHWTC LMQALASRSE 240 CPLEQFKITA IGTTKRQLIE DTGKRLEEFS ETICLPFCFK IVMVSDILDL KEDLFELDDD 300 ETVAMYSGYF IRTLIPLPDR LDSMMKVIRN LNPCIMVVIE PEVYTSSPSF VNCFIEALFY 360 FSAYFDCLEA CMGDDPNRII IESSHFGDAI RNNVATELGE RKSQCSNLNV WGRLLARFGM 420 EETELSSSSL CQGNLVAKTF AGGNSCVLDM DGKSLLIGWK GRPMISLSSW KFISRK

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MLFNPKKEKQ VQFSPTSFRL LKAYRKGLKR TSSQKIIDPA IGKPTAKETS EGLSIEEIIR  60
IAGKRFVRTL TKPVNFASMH NHHIDVCYSG LSTEDAERVH LVGLLLKSAD KVGNQQYDCA  120
NILLDECDGL SSCTGNAVER IVYYFSEALR ERINRQTGRI PSQDLEKLKS FNIDEQIMAP  180
TASLLACYRG VPFHQVAHFA GIQAIVENVA EAKKIHMIDL GIRFGDHWTC LMQALASRSE  240
CPLEQFKITA IGTTKRQLIE DTGKRLEEFS ETICLPFCFK IVMVSDILDL KEDLFELDDD  300
ETVAMYSGYF IRTLIPLPDR LDSMMKVIRN LNPCIMVVIE PEVYTSSPSF VNCFIEALFY  360
FSAYFDCLEA CMGDDPNRII IESSHFGDAI RNNVATELGE RKSQCSNLNV WGRLLARFGM  420
EETELSSSSL CQGNLVAKTF AGGNSCVLDM DGKSLLIGWK GRPMISLSSW KFISRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-38	134	471	36	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084258.1	0.0	DELLA protein RGL1
TrEMBL	A0A067JYQ2	0.0	A0A067JYQ2_JATCU; Uncharacterized protein
STRING	cassava4.1_030912m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	6e-47	RGA-like 1

Link Out ? help Back to Top
Entrez Gene	105643680

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]