PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00115.130

Common Name

GRAS40, GRAS42, JCGZ_19009

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 568aa MW: 64145.7 Da PI: 4.9

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00115.130	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	299.8	6.9e-92	195	565	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilk 92 lve Ll+ Ae v +++ e+a++lL+ +s++g+p+qR++ yf eAL++r+ +++++ + s++ + n++ ++ + ++ P+++ Jcr4S00115.130 195 LVEFLLASAEKVGNQQYERATRLLNYCDISSSNTGNPVQRVVYYFSEALRERIDVGAGRISSKGfKKSQSFNLNQQMTILSSASfaCHQRIPFFQ 289 57889**********************************************9855555554425555444443333333333257899* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ +ta qaI+e ++ge+r+H+iD++i +G+QW L+qaL+sR + p l+i ++g +sk+ + tg+ La+fAe++++pf+f++++ +++ Jcr4S00115.130 290 VASFTAIQAIVENMAGEKRIHVIDLEIRKGVQWSVLMQALSSRHDCPIeLLKISAIGT---TSKQLIDDTGKTLASFAESMNIPFSFKAVMISDM 381 ****************************************6554499***...689*************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 dl+ + L+++++Ea+a+ + ++l ++ +++ d+v+++++++sP+++vv+e ea+ ns+sF++rf+eal +ysa fd+++a + r++ + Jcr4S00115.130 382 LDLKEDLLELDTEEAIAIYSEYSLNNFI----FAPNRLDSVMRVLRNISPQIMVVMEVEANNNSPSFVNRFIEALFFYSAYFDCFDACMDRDDPN 472 ***********************9....45555677*************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r+ E ++++ i+n+va+eg+err rh + +Wr+ + ++G ++++s++ + qa l+l+k++ + +++ +++sl++gWk+ p+ s+S+W Jcr4S00115.130 473 RMITEMIFFHQGIRNIVANEGEERRVRHVKIDTWRSFFARFGIIEAQISTSSMYQATLMLKKFDcGSSCTLDMNNKSLLIGWKGTPIHSLSVW 565 ************************************************************9999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.17	169	545	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-89	195	565	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MADAMLSFDY DFGTARDGLT SSSKSSGGID YGLYQMDSSL DEGFLFSKYQ QQEQVLQPSF 60 GYKDFDDQRL DVLSPLLQTY LEEIANPDEI PRGIKDDSEP KKTSQHYFSL ASLELLKKYG 120 NNGRLNGGRI IDPSSDALYT KHARSELSTE EIIRIAGARF IQSCCQTTDV ASMLNNPFSL 180 SFSDLSSEVA KNVELVEFLL ASAEKVGNQQ YERATRLLNY CDISSSNTGN PVQRVVYYFS 240 EALRERIDVG AGRISSKGFK KSQSFNLNQQ MTILSSASFA CHQRIPFFQV ASFTAIQAIV 300 ENMAGEKRIH VIDLEIRKGV QWSVLMQALS SRHDCPIELL KISAIGTTSK QLIDDTGKTL 360 ASFAESMNIP FSFKAVMISD MLDLKEDLLE LDTEEAIAIY SEYSLNNFIF APNRLDSVMR 420 VLRNISPQIM VVMEVEANNN SPSFVNRFIE ALFFYSAYFD CFDACMDRDD PNRMITEMIF 480 FHQGIRNIVA NEGEERRVRH VKIDTWRSFF ARFGIIEAQI STSSMYQATL MLKKFDCGSS 540 CTLDMNNKSL LIGWKGTPIH SLSVWNFN

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MADAMLSFDY DFGTARDGLT SSSKSSGGID YGLYQMDSSL DEGFLFSKYQ QQEQVLQPSF  60
GYKDFDDQRL DVLSPLLQTY LEEIANPDEI PRGIKDDSEP KKTSQHYFSL ASLELLKKYG  120
NNGRLNGGRI IDPSSDALYT KHARSELSTE EIIRIAGARF IQSCCQTTDV ASMLNNPFSL  180
SFSDLSSEVA KNVELVEFLL ASAEKVGNQQ YERATRLLNY CDISSSNTGN PVQRVVYYFS  240
EALRERIDVG AGRISSKGFK KSQSFNLNQQ MTILSSASFA CHQRIPFFQV ASFTAIQAIV  300
ENMAGEKRIH VIDLEIRKGV QWSVLMQALS SRHDCPIELL KISAIGTTSK QLIDDTGKTL  360
ASFAESMNIP FSFKAVMISD MLDLKEDLLE LDTEEAIAIY SEYSLNNFIF APNRLDSVMR  420
VLRNISPQIM VVMEVEANNN SPSFVNRFIE ALFFYSAYFD CFDACMDRDD PNRMITEMIF  480
FHQGIRNIVA NEGEERRVRH VKIDTWRSFF ARFGIIEAQI STSSMYQATL MLKKFDCGSS  540
CTLDMNNKSL LIGWKGTPIH SLSVWNFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-40	203	566	27	379	Protein SCARECROW
5b3h_A	2e-40	203	566	26	378	Protein SCARECROW
5b3h_D	2e-40	203	566	26	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405289	0.0	KM405289.1 Jatropha curcas GRAS40 protein (GRAS40) mRNA, complete cds.
GenBank	KM405293	0.0	KM405293.1 Jatropha curcas GRAS42 protein (GRAS42) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084259.1	0.0	DELLA protein RGL1
TrEMBL	A0A067K7Y3	0.0	A0A067K7Y3_JATCU; GRAS40 protein
STRING	cassava4.1_032433m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-52	GRAS family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]