PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00096.100

Common Name

JCGZ_20472, LOC105645691, WRKY54

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 338aa MW: 38089.9 Da PI: 5.2161

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00096.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.3	7.6e-29	128	188	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++e+tY+g H+++ Jcr4S00096.100 128 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTIFEVTYRGVHTCS 188 8*************************98899************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-28	115	188	IPR003657	WRKY domain
PROSITE profile	PS50811	22.033	122	185	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-26	126	189	IPR003657	WRKY domain
SMART	SM00774	2.2E-40	127	189	IPR003657	WRKY domain
Pfam	PF03106	8.7E-27	128	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MENSLSWEQK TLISELIQGM EFAKQLRRHL NTSSVETRDS LVQRILSSYE KSLLILNWSG 60 STGQPQSVGV NVGNTNNNVP ESPISMNGSP GSDDFDGNQN DASKKRKKMP RWTDQVKVSS 120 DGLEGPHDDG YSWRKYGQKD ILGAKYPRSY YRCTYRNTQN CWATKQVQRS DEDPTIFEVT 180 YRGVHTCSHG QQSVPPPVSP EKQEQKQNNN QLQHQAQATL SNFQKSLRVK TDDLDNKEME 240 YPFSFPPTYG GVKSSGTYSP SFISPATPEP NYYSVSPFQM NNFIAVQNFP QTDSDFTEII 300 SANTSATNSP IVNPEFSLQS LELDPNFPFD TPGFFSEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-18	128	187	9	68	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485306	0.0	KC485306.1 Jatropha curcas WRKY transcription factor 54 (WRKY54) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086748.1	0.0	probable WRKY transcription factor 53
TrEMBL	S5CKD4	0.0	S5CKD4_JATCU; WRKY transcription factor 54
STRING	cassava4.1_011518m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF493	34	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	4e-72	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	105645691

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]