PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00084.210

Common Name

JCGZ_21688, LOC105649764, WRKY35

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 482aa MW: 53041.5 Da PI: 8.2691

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00084.210	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.3e-30	179	238	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+ Jcr4S00084.210 179 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCIEDMSILITTYEGTHNHP 238 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.2E-31	165	240	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-27	173	240	IPR003657	WRKY domain
PROSITE profile	PS50811	27.864	174	240	IPR003657	WRKY domain
SMART	SM00774	4.8E-36	179	239	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	180	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEDQLRSTKA QIGEVREENE KLKQLLSKIV KDYQSLQKHF SKVMQEETTK KSTKRIRSHE 60 ENDREPELVS LSLGRSSSSE LKKEDEKKSS NVSDGNEELN NVKGLSLGLD CKFEPDSFAT 120 MKKNNNNNNN PSSESNSFDE EETKEEEPTE TWPPSKVSKM IKSTEDEMLQ QTQMKKTRMN 180 DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPT CPVRKQVQRC IEDMSILITT YEGTHNHPLP 240 LSATAMASTT SAAASMLQSQ SFSTSNTSSI SAPSSFSTSN ALNFTFSHNI TKPQQFFFQN 300 SSISTNNSHP TITLDLTSPT NTALFSSSSS SSSSSSLSAP KYSPTCLNFS SSSFDSSTLQ 360 TPWPNINGHH QPYPINYRNV NVPHQLYNNQ TTTSSSYQSL TESIAAATKV IALDPGFRTA 420 LAAAITSFVG NGGNNAGSGG QYHTNLRSQE KGSLVLFPSS LPFSASKSSS GSLDESRDRN 480 KG

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEDQLRSTKA QIGEVREENE KLKQLLSKIV KDYQSLQKHF SKVMQEETTK KSTKRIRSHE  60
ENDREPELVS LSLGRSSSSE LKKEDEKKSS NVSDGNEELN NVKGLSLGLD CKFEPDSFAT  120
MKKNNNNNNN PSSESNSFDE EETKEEEPTE TWPPSKVSKM IKSTEDEMLQ QTQMKKTRMN  180
DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPT CPVRKQVQRC IEDMSILITT YEGTHNHPLP  240
LSATAMASTT SAAASMLQSQ SFSTSNTSSI SAPSSFSTSN ALNFTFSHNI TKPQQFFFQN  300
SSISTNNSHP TITLDLTSPT NTALFSSSSS SSSSSSLSAP KYSPTCLNFS SSSFDSSTLQ  360
TPWPNINGHH QPYPINYRNV NVPHQLYNNQ TTTSSSYQSL TESIAAATKV IALDPGFRTA  420
LAAAITSFVG NGGNNAGSGG QYHTNLRSQE KGSLVLFPSS LPFSASKSSS GSLDESRDRN  480
KG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-20	171	240	6	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485287	0.0	KC485287.1 Jatropha curcas WRKY transcription factor 35 (WRKY35) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091927.1	0.0	probable WRKY transcription factor 36 isoform X2
TrEMBL	S5CH50	0.0	S5CH50_JATCU; WRKY transcription factor 35
STRING	cassava4.1_026701m	1e-157	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	4e-43	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Entrez Gene	105649764

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]