PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00070.150
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRF
Protein Properties Length: 382aa    MW: 42191.7 Da    PI: 8.7406
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00070.150genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC45.51.3e-142042361345
             WRC  13 KkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     KkWRCsr++++++k+CE+H++rgr rsrk++e+
  Jcr4S00070.150 204 KKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEA 236
                     9*****************************996 PP
2QLQ53.57.3e-19109143236
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                     aFTa+Q ++Lk+Q+l+yKy++a++PvP +Ll +++
  Jcr4S00070.150 109 AFTASQRMELKQQALIYKYISASVPVPDNLLIPLK 143
                     8******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-9108144IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-13109142IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.576109144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166716.371177236IPR014977WRC domain
PfamPF088793.8E-12204235IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDSNEASSQV SSICEANQTV HIFSLAKQES QSMLLNHLRA PPLLTPTGSL VSGSSSSLKP  60
ESASPFWNGD DGLMERSGQS YTAFPYYRSA SYSRSIDYGR ENLNGVTVAF TASQRMELKQ  120
QALIYKYISA SVPVPDNLLI PLKSNLRPHP YGLSAPSAGF FPSNSCVSLR KDGHTWGPEE  180
WDGVVSXXXX XXXXXXXXXX XXXKKWRCSR DTVADQKYCE KHMNRGRYRS RKPVEAQTAA  240
HATNTNNIMP VTVISGRPIH AIPQLQQSKN EETANNSGIY GNCDPFLSFW NDDHGWLNNN  300
NNNNNNNNNN NKQLKSDHWT QLSMSNPIAT SAMQERASLS PLRSSSVLGK KMDELTQKQS  360
YSAVGGPLGE VLNASFACNG GK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079596.20.0growth-regulating factor 2
TrEMBLA0A067KJV60.0A0A067KJV6_JATCU; Uncharacterized protein
STRINGPOPTR_0007s14720.11e-42(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.17e-27growth-regulating factor 2