PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00052.30

Common Name

JCGZ_07090, LOC105637559, WRKY29

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 251aa MW: 28524.2 Da PI: 8.7473

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00052.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.3e-29	95	153	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+ ed+++++ tYegeHnh+ Jcr4S00052.30 95 RDGYQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKVQRCVEDKSLLVATYEGEHNHD 153 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-30	84	154	IPR003657	WRKY domain
PROSITE profile	PS50811	26.349	89	155	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-26	90	154	IPR003657	WRKY domain
SMART	SM00774	2.6E-34	94	154	IPR003657	WRKY domain
Pfam	PF03106	8.0E-25	96	153	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDAHSSYKEK VEALQYELER TRKENETLRF MVEVMSAKFS SLQENVQENK LFKVQESSNY 60 EVYDSIKRQR IEIPMAKPSQ IFVRTESKDT SLIVRDGYQW RKYGQKVTKD NPSPRAYFRC 120 SMAPGCPVKK KVQRCVEDKS LLVATYEGEH NHDRTSGHFL YSPDSSSSRN SRSSISCPVS 180 IRPASVALDL TLSSNSILEK EKTCRSSSDD HETKNCNFKV EEYVASLTKD PNFTVALAAA 240 IARSIPSPTL P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-23	79	157	1	76	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485281	0.0	KC485281.1 Jatropha curcas WRKY transcription factor 29 (WRKY29) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076437.1	0.0	probable WRKY transcription factor 40
TrEMBL	S5CS62	0.0	S5CS62_JATCU; WRKY transcription factor 29
STRING	cassava4.1_014614m	1e-101	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7398	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	2e-46	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Entrez Gene	105637559

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]