PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00050.60

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 579aa MW: 67040.3 Da PI: 8.2888

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00050.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	7.9e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l Jcr4S00050.60 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVMLEHNHLL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-19	60	143	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.94	461	497	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-4	470	493	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	472	499	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MAEAPCSIDQ LPDGELIKSQ KEKDGEITEL HGENGVHEEK KEFVPPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RVLEVMLEHN HLLGTKIYKS VKKMGTGNKR KSQSSSDAEV RTIKLYRALV 180 IDAGGNGNSS SNAREVGSFS EVPHQLNLKR GDAQAIYNYL CRMQLTNPNF FYLMDLNDEG 240 HLRNVFWVDA RSRAARGYFS DVIYIDNTYL SSKYEIPLVA FVGSKSTHGQ SVLLGCGLLA 300 AAWGFMIQRF GVVDHEWLRS LYEDRVWWAP VYLKDTIFAG LSSAQPGEAL NPFFDKYVHK 360 QTPLKEFLDK YELALQKKHK EETLADIESR SSGPPLKTRC SFELQLSKVY TREIFKKFQF 420 EVEEMYSCFS TTQIHVDGPI IIFLVKERVM GEGNRREIRD YEVLYNRSAG EVRCICSCFN 480 FYGYLCRHAL CVLNFNGVEE VPSKYILSRW KKDYKRLYIP DHSSNRVNVT DRVQWFNQLY 540 RSALQVVEEG VISLDHYSVA LQAFEESLNR VHEVEEKQE

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MAEAPCSIDQ LPDGELIKSQ KEKDGEITEL HGENGVHEEK KEFVPPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RVLEVMLEHN HLLGTKIYKS VKKMGTGNKR KSQSSSDAEV RTIKLYRALV  180
IDAGGNGNSS SNAREVGSFS EVPHQLNLKR GDAQAIYNYL CRMQLTNPNF FYLMDLNDEG  240
HLRNVFWVDA RSRAARGYFS DVIYIDNTYL SSKYEIPLVA FVGSKSTHGQ SVLLGCGLLA  300
AAWGFMIQRF GVVDHEWLRS LYEDRVWWAP VYLKDTIFAG LSSAQPGEAL NPFFDKYVHK  360
QTPLKEFLDK YELALQKKHK EETLADIESR SSGPPLKTRC SFELQLSKVY TREIFKKFQF  420
EVEEMYSCFS TTQIHVDGPI IIFLVKERVM GEGNRREIRD YEVLYNRSAG EVRCICSCFN  480
FYGYLCRHAL CVLNFNGVEE VPSKYILSRW KKDYKRLYIP DHSSNRVNVT DRVQWFNQLY  540
RSALQVVEEG VISLDHYSVA LQAFEESLNR VHEVEEKQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022149346.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_022149354.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	1e-152	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A5C496	0.0	A5C496_VITVI; Uncharacterized protein
STRING	POPTR_0003s02570.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-151	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]