PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00043.80

Common Name

GRAS34, JCGZ_22609, LOC105646170

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 484aa MW: 54426.9 Da PI: 4.7132

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00043.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	179.9	1.8e-55	144	369	2	234
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 v+lLl+cAeav +d++la+++L+++ + +++ gd++qR+ +f+ +L++rl+ l++ + + + + + +e++ a++l+++++P++ f++++ Jcr4S00043.80 144 VHLLLACAEAVGCRDTQLANSILSQIWTSVNSWGDSLQRVSYCFALGLKSRLSL----LVHNVDAMDVTMVTRKEKMEAFQLLYQTTPYIAFGFMA 235 79*************************************************9....6666666666666699****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlele 192 aN+aI +a+++++ +H+iD+++ lQWp+++++LasRpegpp++RiTg+ + + ++ ele+ + L + A+++g+++ef++l + + + l+ e Jcr4S00043.80 236 ANEAICQAAKEKDSLHVIDLGMDSTLQWPSFIRTLASRPEGPPTVRITGLIN-NDQNLLELEASMKALVEDASSFGISLEFDILSEPvSPAVLTRE 330 **********************************************99.557999********************8443477889* PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 +L++++gE+l Vn+v++lh++++es + + ++L+++k+l Jcr4S00043.80 331 NLNLREGETLFVNSVMHLHKFVKESRGSLK---AILQAIKKL 369 ********************88777666...9***998 PP
2	GRAS	115	9.8e-36	370	476	266	374
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 ++fdslea+lpr++++r+k+E++ +++e++n+va ega+r+erhe++ +Wr++l++aGF++v+l+ +qa+++l+ +++dgy++ +e+g+l+lg Jcr4S00043.80 370 TIFDSLEASLPRTNQQRMKIEKHHFAEEVRNIVAYEGADRVERHERADQWRRQLGRAGFQAVELK--CLSQARMMLSVYGVDGYTLGSEKGCLLLG 463 69**********************************************************996..79*********************** PP GRAS 362 WkdrpLvsvSaWr 374 Wk+rp+v +SaW+ Jcr4S00043.80 464 WKGRPIVLASAWQ 476 **********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.935	117	458	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-53	144	369	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-33	370	476	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MEAMNGRLSF SMHESLNHDF AIRRFCPARM EQEQGVELEE TIIMNDFELL SSCDDTISNP 60 HLAASEVDEL VDSFINVDQL QDIDNDNHQS PKKFQDEIMD AFPMVEGGDE LEMRSGSYIY 120 EEMVGVPSVE EESHGVDQRA SIWVHLLLAC AEAVGCRDTQ LANSILSQIW TSVNSWGDSL 180 QRVSYCFALG LKSRLSLLVH NVDAMDVTMV TRKEKMEAFQ LLYQTTPYIA FGFMAANEAI 240 CQAAKEKDSL HVIDLGMDST LQWPSFIRTL ASRPEGPPTV RITGLINNDQ NLLELEASMK 300 ALVEDASSFG ISLEFDILSE PVSPAVLTRE NLNLREGETL FVNSVMHLHK FVKESRGSLK 360 AILQAIKKLT IFDSLEASLP RTNQQRMKIE KHHFAEEVRN IVAYEGADRV ERHERADQWR 420 RQLGRAGFQA VELKCLSQAR MMLSVYGVDG YTLGSEKGCL LLGWKGRPIV LASAWQLHNV 480 PPPS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MEAMNGRLSF SMHESLNHDF AIRRFCPARM EQEQGVELEE TIIMNDFELL SSCDDTISNP  60
HLAASEVDEL VDSFINVDQL QDIDNDNHQS PKKFQDEIMD AFPMVEGGDE LEMRSGSYIY  120
EEMVGVPSVE EESHGVDQRA SIWVHLLLAC AEAVGCRDTQ LANSILSQIW TSVNSWGDSL  180
QRVSYCFALG LKSRLSLLVH NVDAMDVTMV TRKEKMEAFQ LLYQTTPYIA FGFMAANEAI  240
CQAAKEKDSL HVIDLGMDST LQWPSFIRTL ASRPEGPPTV RITGLINNDQ NLLELEASMK  300
ALVEDASSFG ISLEFDILSE PVSPAVLTRE NLNLREGETL FVNSVMHLHK FVKESRGSLK  360
AILQAIKKLT IFDSLEASLP RTNQQRMKIE KHHFAEEVRN IVAYEGADRV ERHERADQWR  420
RQLGRAGFQA VELKCLSQAR MMLSVYGVDG YTLGSEKGCL LLGWKGRPIV LASAWQLHNV  480
PPPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-44	150	475	26	378	Protein SCARECROW
5b3h_A	7e-44	150	475	25	377	Protein SCARECROW
5b3h_D	7e-44	150	475	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405261	0.0	KM405261.1 Jatropha curcas GRAS34 protein (GRAS34) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087362.1	0.0	DELLA protein RGL1
TrEMBL	A0A067JZV5	0.0	A0A067JZV5_JATCU; GRAS34 protein
STRING	cassava4.1_026862m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13251	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-57	RGA-like 1

Link Out ? help Back to Top
Entrez Gene	105646170

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]