PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00035.90

Common Name

JCGZ_11595, WRKY36

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 596aa MW: 64744.7 Da PI: 7.5475

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00035.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	254	313	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Jcr4S00035.90 254 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCAEDMSILITTYEGTHNHP 313 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-31	240	315	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-27	248	315	IPR003657	WRKY domain
PROSITE profile	PS50811	28.231	249	315	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	254	314	IPR003657	WRKY domain
Pfam	PF03106	9.9E-27	255	313	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MEDVIRRSSH GGLIKEQRPA DSTATDHHDH DSSSREEIVN NKVVVATNNK ERCIMEFDSG 60 PSSSSLKEQD SWLESARAEM DVVREENQRL KMSLGQMMKD YQALQMKFHD IIQQDQETKR 120 SYMSTVDNNN YQHAVEEPEF ISLTLGRVSS NNDSKKDGKS KTLNYKEVEK DNNNNECLSL 180 GLECKFELSK SQAINLPKPS PVNSLESHKE EAEETWPSNK VPKTMPSGED EVVQQNPLKK 240 ARGCVRAKCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPTCPVRK QVQRCAEDMS 300 ILITTYEGTH NHPLPLSATA MASTTSAAAS MLLSGSLTSS SQANTSTIPA GLHGLNFYLS 360 DTSNSKQFYM HNSSLSPSPS HPTITLDLTS SNASSSSVNR SFSSSYSPFP KFATPGTLNF 420 SSSDSHLMNW GNGFLSYGTS TTSLQPYNRN NQPGSLNNHL QPYMQKKTLI STTPQQPPLP 480 DTIAAASKAI ATDPSFQSAL AAAITSIIGT ANGNGGANLG SGDNLAQKLK WGENFPVASG 540 YASSGAAKSN NACATSYLNR TTSGNSQPGN LMFLPPSLPF SSPKSASSSP GDNRDH

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MEDVIRRSSH GGLIKEQRPA DSTATDHHDH DSSSREEIVN NKVVVATNNK ERCIMEFDSG  60
PSSSSLKEQD SWLESARAEM DVVREENQRL KMSLGQMMKD YQALQMKFHD IIQQDQETKR  120
SYMSTVDNNN YQHAVEEPEF ISLTLGRVSS NNDSKKDGKS KTLNYKEVEK DNNNNECLSL  180
GLECKFELSK SQAINLPKPS PVNSLESHKE EAEETWPSNK VPKTMPSGED EVVQQNPLKK  240
ARGCVRAKCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPTCPVRK QVQRCAEDMS  300
ILITTYEGTH NHPLPLSATA MASTTSAAAS MLLSGSLTSS SQANTSTIPA GLHGLNFYLS  360
DTSNSKQFYM HNSSLSPSPS HPTITLDLTS SNASSSSVNR SFSSSYSPFP KFATPGTLNF  420
SSSDSHLMNW GNGFLSYGTS TTSLQPYNRN NQPGSLNNHL QPYMQKKTLI STTPQQPPLP  480
DTIAAASKAI ATDPSFQSAL AAAITSIIGT ANGNGGANLG SGDNLAQKLK WGENFPVASG  540
YASSGAAKSN NACATSYLNR TTSGNSQPGN LMFLPPSLPF SSPKSASSSP GDNRDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	254	315	14	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485288	0.0	KC485288.1 Jatropha curcas WRKY transcription factor 36 (WRKY36) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080543.2	0.0	probable WRKY transcription factor 61
TrEMBL	S5CKG5	0.0	S5CKG5_JATCU; WRKY transcription factor 36
STRING	XP_002511536.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	5e-69	WRKY DNA-binding protein 61

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]