PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00028.40
Common NameJCGZ_26137, LOC105648493
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 311aa    MW: 34425.3 Da    PI: 5.2618
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00028.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.7e-35241152102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++++isw+e+g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll +i
  Jcr4S00028.40  24 FLTKTYQLVDDQTIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKKLLLDI 110
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  Jcr4S00028.40 111 QRRKI 115
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-3814107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-5520113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.7E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPPSGEQNGD AVTAESQRSL PTPFLTKTYQ LVDDQTIDDV ISWNEDGSTF IVWNPTVFAR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNDCFR RGEKKLLLDI QRRKISMQAA  120
TTVTPPPTPM AVTPAAIPMA KPVISPSNSG DEQVISTNSS PSRVAQGSGP NAELLDENDR  180
LRKENVQLTK ELTEMKNLCN NIFSLVSNYA STQSEGSFHS SESEGLPTAK PLDFLPVKQF  240
SGEETSARLF GVAIGIKRGR EGEGATGEND TQLQLQQPGA NAVKDEPHDC QNGRVSGDDK  300
NSTWLKSVRE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-252411329129Heat shock factor protein 1
5d5v_B9e-252411329129Heat shock factor protein 1
5d5v_D9e-252411329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090286.10.0heat stress transcription factor B-2b
SwissprotQ9SCW46e-92HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A067JEK50.0A0A067JEK5_JATCU; Uncharacterized protein
STRINGcassava4.1_012303m1e-162(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-89heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]