PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc062532.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 119aa    MW: 13713.6 Da    PI: 10.5078
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc062532.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.94.3e-1539116270
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkk 70 
                               Y++YA+  GF+vr+s+ kk+ r+geit++ +vCs++g+++ ++kk          + k++++r+++r+gC+ak+  +k
  Itr_sc062532.1_g00001.1  39 LYRSYARVGGFDVRQSTVKKN-RKGEITMKYLVCSRQGFKSVSSKKlkisehcddiSPKQQQRRTSNRVGCNAKVSFRK 116
                              7****************9998.7788******************99*********99999999***********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-1239116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
HRTMAVPPDT PQFWIPDCAD ENRPYVGQRF KTLDDGVQLY RSYARVGGFD VRQSTVKKNR  60
KGEITMKYLV CSRQGFKSVS SKKLKISEHC DDISPKQQQR RTSNRVGCNA KVSFRKVET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-08FAR1-related sequence 11