PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc046742.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21342.6 Da PI: 10.2472 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.6 | 2.5e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s+r++++ kR+ g+lKK +EL +LCda va+i++ss Itr_sc046742.1_g00001.1 11 IVNESKRKTSYRKRKRGLLKKINELTILCDAVVAMIMYSS 50 789***********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.53E-20 | 1 | 83 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.348 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.47E-21 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 7.0E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MARRRLRLAY IVNESKRKTS YRKRKRGLLK KINELTILCD AVVAMIMYSS FEQGPVIWPP 60 TVERFEELIV RFLNLPDEQQ TRRMMSNESL NTGRIEKLNT QLLNLKNKNR KREMNELMHQ 120 ILTGEQSIDS LNFTDLNDIG WVLNTNLADV GMRFRELERD SSPTLAPTAS PSVLGPGTSN 180 VDVFS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RRRLRLAYIVNESKRKTSYRKRK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019170462.1 | 3e-82 | PREDICTED: agamous-like MADS-box protein AGL80 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-19 | AGAMOUS-like 80 |