PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc041614.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 240aa    MW: 27013.2 Da    PI: 4.9663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc041614.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.73.8e-091410442128
                      NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektd 120
                               eP ++    +++    y+F++ ++k ++g+r  r + ++g+Wk +   +++ + +++++g +k +         +gr  +     
  Itr_sc041614.1_g00001.1  14 KEPAEIF--GSGDPMTRYYFTELRRKCERGSRFWRgVGERGTWKGQDAGHPIRV-RDKVMGFRKKFEVRdekikkQGRLGNRPGEA 96 
                              4777774..22334477******************9999**************9.8899*******99966554445555555789 PP

                      NAM 121 Wvmheyrl 128
                              W+m+ey+l
  Itr_sc041614.1_g00001.1  97 WLMKEYSL 104
                              ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.6081127IPR003441NAC domain
SuperFamilySSF1019413.27E-1414126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
TSDFIALEDL YGEKEPAEIF GSGDPMTRYY FTELRRKCER GSRFWRGVGE RGTWKGQDAG  60
HPIRVRDKVM GFRKKFEVRD EKIKKQGRLG NRPGEAWLMK EYSLSDDYLR NKHVVLKDVV  120
LCRIRRRVVR STSRSSESST LNINENDTPL EIYNWPENDD VTVSLPPSQT PTLAAVAAEA  180
ASGVDDANGG VIAMDNQTLQ VDEFNELDEL LRRLENDDVT LSLPPSETST LAAAQVSSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16374RVRDKVMGFRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163553.12e-87PREDICTED: NAC domain-containing protein 78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-07NAC domain containing protein 2