PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc040735.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 118aa MW: 12586.9 Da PI: 5.8316 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.5 | 6.8e-11 | 62 | 110 | 2 | 52 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteker 52 fY++YA +vGF+ r+s+++k ++ g ++ ++ vCs+eg++++++++ +++ Itr_sc040735.1_g00001.1 62 FYKQYAGSVGFDCRQSTTRKGRDGG-VVLKQAVCSREGFKKSSSST-SSTT 110 9***************999985555.889999*********99988.3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-8 | 62 | 110 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
LNMDYASGGC DEGYSTDIGV EGNACDIEIS PGMTKYWRLN CAESLKPHVG QQFVSLDTAF 60 GFYKQYAGSV GFDCRQSTTR KGRDGGVVLK QAVCSREGFK KSSSSTSSTT QSNVGDVG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172755.1 | 3e-39 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-09 | FAR1 family protein |