PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc033226.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 223aa MW: 25519.6 Da PI: 9.3403

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc033226.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.5	9.8e-31	6	80	55	129
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ekewy Fs++dkky++g+r+nrat++g+Wkatg+dk ++ ++++ +g++ktLvfykgrap+g+k+dW+mheyrle Itr_sc033226.1_g00001.1 6 EKEWYLFSQSDKKYPSGSRRNRATSAGFWKATGRDKVIYGNNRRIIGMRKTLVFYKGRAPRGQKSDWIMHEYRLE 80 68***********************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.023	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-35	5	100	IPR003441	NAC domain
Pfam	PF02365	3.3E-14	9	79	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGLTPEKEWY LFSQSDKKYP SGSRRNRATS AGFWKATGRD KVIYGNNRRI IGMRKTLVFY 60 KGRAPRGQKS DWIMHEYRLE LDNNHTTSHD GWVVCRLFKK KKNMHQKALD NNPGGVLDQM 120 NETQSTNSEE LISSPSCQSF EDIMFDETKN TITPLSRGWV ALDRLAASHL DTSKHLTTAH 180 SGDYLNNFLH LPFHYDHGSG LINLCASIRP NDDPHHQISQ VNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	2	106	66	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	2	106	66	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	2	106	66	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	2	106	66	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-32	2	106	66	171	NAC domain-containing protein 19
4dul_B	1e-32	2	106	66	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081420.2	1e-52	NAC domain-containing protein 12
Swissprot	Q84WP6	1e-48	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A2G9FWY8	8e-49	A0A2G9FWY8_9LAMI; Uncharacterized protein
STRING	XP_010100656.1	3e-48	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	6e-51	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]