PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc032928.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17447.4 Da PI: 7.9688 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 8 | 56 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g Itr_sc032928.1_g00001.1 8 FRGVRKRQ-WGRYAAEIRDP---GKKNRVWLGTFDTAEEAARAYDAAARQFRG 56 8****888.**********8...5579***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.89E-18 | 6 | 64 | No hit | No description |
PROSITE profile | PS51032 | 23.591 | 7 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-32 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-38 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-13 | 8 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 8 | 65 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
GSDYTANFRG VRKRQWGRYA AEIRDPGKKN RVWLGTFDTA EEAARAYDAA ARQFRGPKAK 60 TNFPLPSENH SPSHSNIVES SASSTSCATS VSVRLDLSIT GFPWRGDPAT GVPVPVLPKC 120 AAPVCAAHSD SDSSSVVDES HFDAGLAKKC LNLDLNLAPP MES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 7 | 65 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 7 | 65 | 5 | 64 | ATERF1 |
3gcc_A | 2e-19 | 7 | 65 | 5 | 64 | ATERF1 |
5wx9_A | 3e-19 | 6 | 64 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019194110.1 | 8e-46 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 3e-40 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2G9HCE2 | 7e-44 | A0A2G9HCE2_9LAMI; Uncharacterized protein | ||||
STRING | XP_009595390.1 | 3e-39 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009609806.1 | 3e-39 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 5e-25 | erf domain protein 9 |