PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc032675.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 50aa MW: 5556.78 Da PI: 10.9829 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+ Itr_sc032675.1_g00001.1 10 FITNDSARKATLKKRKKGLMKKVSELSTLCGIDACAIIYSP 50 89*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.83E-19 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.722 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-15 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-18 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 38 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 50 aa Download sequence Send to blast |
MTRKKVKLAF ITNDSARKAT LKKRKKGLMK KVSELSTLCG IDACAIIYSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFITNDSARKATLKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of gametophytes and seeds. {ECO:0000269|PubMed:12815071}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by MEA, FIS2 and FIE in seeds, and by PKL after germination. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:16359393}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618313.1 | 1e-27 | PREDICTED: agamous-like MADS-box protein AGL86 | ||||
Swissprot | O80805 | 1e-16 | PHE1_ARATH; MADS-box transcription factor PHERES 1 | ||||
TrEMBL | A0A067JUW4 | 7e-25 | A0A067JUW4_JATCU; Uncharacterized protein | ||||
STRING | XP_009618313.1 | 5e-27 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-14 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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