PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc016945.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Dof | ||||||||
Protein Properties | Length: 225aa MW: 25154.2 Da PI: 7.2175 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 88.4 | 6.3e-28 | 17 | 71 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++cprC+s++tkf y+nnys+ qPry+C++C+r+Wt+GG r++P Gg ++k k+ Itr_sc016945.1_g00001.1 17 RECPRCQSNDTKFSYFNNYSMDQPRYYCRTCKRHWTHGGIQRDIPSGGRSKKGKR 71 79**********************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57783 | 9.78E-5 | 12 | 55 | No hit | No description |
PROSITE profile | PS50884 | 24.092 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-27 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-16 | 18 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 19 | 55 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
VRSSRAMDYH ATPLPPRECP RCQSNDTKFS YFNNYSMDQP RYYCRTCKRH WTHGGIQRDI 60 PSGGRSKKGK RFTTSHENQR VQLALPSPPQ LQPLSLLPNL TPLAFISPMV SPMMTPHDTS 120 GGFLPPMVEK AINQPTQFQA ENGYLNWVNP LNIVDQSFLH LTTRHSDSCM ATFDLNNNGA 180 SSSNILSVDS SMGKISTTDG GTNVSSDSLF VDIDEWLDFS NDLAH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167853.1 | 1e-107 | PREDICTED: dof zinc finger protein DOF5.6-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45610.1 | 5e-23 | Dof family protein |