PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc013484.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 15889 Da PI: 4.8554 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.9 | 1.1e-07 | 1 | 25 | 27 | 51 |
HHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51 +S+LC++e+a+++fs++gk +++s+ Itr_sc013484.1_g00001.1 1 MSTLCGTEIAMVVFSPSGKAFTFSN 25 69*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.951 | 1 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-8 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-6 | 2 | 23 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSTLCGTEIA MVVFSPSGKA FTFSNPDLNT VLTKYFVQNP TTEANIPELL VRYHREANKN 60 AQINILEAQI DEEMLINQAL REAERGRPSI SSLQLPELQS MKYQMETLYS QVIEKLNQFS 120 MMGAQSQAVP SHFGTNGGAG SSGI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191690.1 | 8e-48 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A328DKU4 | 4e-37 | A0A328DKU4_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484N931 | 3e-37 | A0A484N931_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-13 | AGAMOUS-like 61 |