PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc011399.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 135aa MW: 14997.1 Da PI: 8.8917 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.1 | 3.7e-15 | 57 | 134 | 1 | 69 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvk 69 +fY +YA +vGF+vr+s+++k r g++ ++ +vCs++g++++ k+ + + +r+r+++r+gC+ak+ +k Itr_sc011399.1_g00001.1 57 DFYVQYACTVGFDVRRSTETKD-RMGNVLRKYLVCSRKGFKQPAKDVcpvgeevgdgSISPKRRRVTNRVGCNAKIILK 134 6*****************9998.6677****************9988********99889999************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-12 | 57 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAASFCDDEG LSGGSDGSNE CVMNLSPRGT KYWIPSCDEA RQPFVGQRFS KLDDGIDFYV 60 QYACTVGFDV RRSTETKDRM GNVLRKYLVC SRKGFKQPAK DVCPVGEEVG DGSISPKRRR 120 VTNRVGCNAK IILKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 120 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172923.1 | 3e-47 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019178867.1 | 3e-45 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 3e-12 | FAR1-related sequence 10 |